{"id":52,"date":"2012-07-17T07:56:18","date_gmt":"2012-07-17T11:56:18","guid":{"rendered":"http:\/\/www.ramapo.edu\/tas\/publications-research\/"},"modified":"2025-02-04T13:21:48","modified_gmt":"2025-02-04T18:21:48","slug":"publications-research","status":"publish","type":"page","link":"https:\/\/www.ramapo.edu\/tas\/publications-research\/","title":{"rendered":"Student &amp; Faculty Publications"},"content":{"rendered":"<h3>Publications<\/h3>\n<p>&nbsp;<\/p>\n<p><strong>Professor Steve Anderson\u00a0<\/strong>\u00a0Chemistry<\/p>\n<ul>\n<li>D. Mazza, T. Simons, A. Toth and <strong>S.\u00a0Anderson<\/strong>\u00a0(2012)\u00a0Reducing Unsaturated Organic Compounds via Transfer Hydrogenation using\u00a0Wilkinson&#8217;s Catalyst and Isopropanal,\u00a0JUCR,, 11, 59.<\/li>\n<\/ul>\n<p><strong>Professor Paramjeet Bagga\u00a0 <\/strong>Bioinformatics, Genomics, Molecular Biology<\/p>\n<ul>\n<li>Frees, S., *Menendez, C., *Crum, M., and <strong>Bagga, P.<\/strong> (2014). QGRS-Conserve: a computational method for discovering evolutionarily conserved G-quadruplex motifs. <em><a href=\"http:\/\/www.humgenomics.com\/content\/8\/1\/8\">Human Genomics. <\/a><\/em><a href=\"http:\/\/www.humgenomics.com\/content\/8\/1\/8\"><strong>8:<\/strong>8<\/a>.<\/li>\n<li>*Menendez, C., Frees, S., and <strong>Bagga, P<\/strong>. (2012) QGRS-H Predictor: A Web Server for Predicting Homologous Quadruplex forming G-Rich Sequence Motifs in Nucleotide Sequences. <a href=\"http:\/\/nar.oxfordjournals.org\/content\/early\/2012\/05\/10\/nar.gks422.full?keytype=ref&amp;ijkey=90aQTvF26OeC8yJ\">Nucleic Acids Res. doi: 10.1093\/nar\/gks422.<\/a><\/li>\n<li><strong>Bagga, P.<\/strong> (2012). Development of an undergraduate bioinformatics degree program at a liberal arts college. Yale J Biol Med. 85:309-21.<\/li>\n<li>*Bindra, R.S., Wang, J.T.L., and\u00a0<strong>Bagga, P.S<\/strong>. (2010). Bioinformatics methods for studying microRNA and ARE mediated regulation of post-transcriptional gene expression. International Journal of Knowledge Discovery in Bioinformatics.\u00a0<a href=\"http:\/\/www.igi-global.com\/Bookstore\/Article.aspx?TitleId=47098\">1: 97-112.<\/a><\/li>\n<li><strong>Bagga, P<\/strong>. (2008). Bioinformatics approaches for studying Untranslated Regions of mRNAs. In: Wilusz, J. ed. Methods in Molecular Biology Series: Post-Transcriptional Gene Regulation. The Humana Press Inc., Totowa New Jersey. <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/18369972\">pp. 1-21.<\/a><\/li>\n<\/ul>\n<p>*Undergraduate students<\/p>\n<p><strong>Professor Kathy Burke\u00a0<\/strong> Nursing<\/p>\n<ul>\n<li>Robinson, J and <strong>Burke, K.<\/strong>\u00a0 \u201cGenerational Differences and Learning Style Preferences in Nurses from a Large Metropolitan Medical Center<em>.\u201d\u00a0 Journal of Nursing and Staff Development<\/em>.\u00a0 (28)4, July\/August 2012<\/li>\n<\/ul>\n<p><strong>Professor Sourav Dutta<\/strong> Computer Science<\/p>\n<ul>\n<li>\n<div>Sheheeda\u00a0Manakkadu, and <b>Sourav Dutta<\/b>. &#8220;On efficient resource allocation in the internet of things environment.&#8221; In\u00a0<i>Proceedings of the 8th International Conference on the Internet of Things<\/i>, p. 22. ACM, 2018.<\/div>\n<\/li>\n<li>\n<div><b style=\"font-family: Arial, sans-serif;font-size: 14px\">Sourav Dutta<\/b><span style=\"font-family: Arial, sans-serif;font-size: 14px\">, and Dimitri Kagaris, \u201cPlurality voting and the computation of the average duration of frames of parallel mutual exclusion accesses.\u201d <\/span><i style=\"font-family: Arial, sans-serif;font-size: 14px\">J. of Appl. Math. Inf. Sci.<\/i><span style=\"font-family: Arial, sans-serif;font-size: 14px\"> 12(2018), no. 4, 815\u2013823.<\/span><\/div>\n<\/li>\n<li>\n<div><span style=\"font-size: 14px\">Rachael\u00a0<\/span><span style=\"font-size: 14px;font-family: Arial, sans-serif\">Chertok, Nicholas Cockcroft, and <b>Sourav Dutta<\/b>. &#8220;A Concurrent Recommender System Based on Social Network.&#8221;\u00a0<i>In: Yang A. et al. (eds) Services \u2013 SERVICES 2018. SERVICES 2018. <\/i>Lecture Notes in Computer Science, vol 10975. Springer, Cham, 2018.<\/span><\/div>\n<\/li>\n<\/ul>\n<p><strong>Professor Andrea Centrella-Nigro<\/strong> Nursing<\/p>\n<ul>\n<li>Centrella-Nigro, A.\u00a0 Collaborative testing as post-test review. <em>Nursing Education Perspectives, 33(5) 340-341, 2012.<\/em><\/li>\n<\/ul>\n<p><strong>Professor Scott Frees\u00a0<\/strong> Computer Science<\/p>\n<ul>\n<li>Auteri, C., Guerra, M., <strong>Frees, S<\/strong>. (2013) &#8220;Increasing Precision for Extended Reach 3D Manipulation&#8221;. International Journal of Virtual Reality (accepted)<\/li>\n<\/ul>\n<p><strong>Professor Max Goldberg<strong>-Rugalev\u00a0 <\/strong>\u00a0<\/strong> Mathematics<\/p>\n<ul>\n<li>Goldberg and S. Kim<em>, A natural diffusion distance and equivalence of local convergence and local equicontinuity for a general symmetric diffusion semigroup<\/em>,\u00a0Abstract and Applied Analysis, vol. 2018, Article ID 6281504, 9 pages, 2018.\u00a0<a href=\"https:\/\/doi.org\/10.1155\/2018\/6281504\">https:\/\/doi.org\/10.1155\/2018\/6281504<\/a>.<\/li>\n<li><strong>M. Goldberg<\/strong> and S. Kim, An efficient tree-based computation of a metric comparable to a natural diffusion distance, Applied and Computational Harmonic Analysis, Vol. 33, Issue 2, September 2012, pp. 261-281.<\/li>\n<\/ul>\n<p><strong>Professor Margaret Greene<\/strong>\u00a0Nursing<\/p>\n<ul>\n<li>Greene, M.J. (2018). \u201cIncreasing Cultural Competence Utilizing Innovative Partnerships.\u201d Abstract published in the <em>Proceeding of the Annual Reinkemeyer Research Day,<\/em>Spring 2018.<\/li>\n<li>Greene, M.J. (2017). \u201cEnhancing Cultural Competence through Clinical Partnerships.\u201d Abstract published in the <em>Proceedings of the <\/em>21st<em>Annual NYU Langone Nursing Research and Evidence-Based Practice Conference<\/em>, Spring 2017.<\/li>\n<li>Greene, M.J. (2016). \u201cCreative Academic and Clinical Partnerships in Nursing Education.\u201d Abstract published in the <em>Proceedings of the St. Anselm Annual Conference for Nurse Educators<\/em>, Spring 2016.<\/li>\n<li>Greene, M.J. (2015). \u201cEnhancing Cultural Competence through Academic Partnerships: A Case Study for Collaboration.\u201d Abstract published in the <em>Proceedings of the 19<sup>th<\/sup><\/em><em>Annual NYU Langone Nursing Research and Evidence- Based Practice Conference, <\/em>Spring 2015.<\/li>\n<li>Greene, M.J. (2014). \u201cA Model for Innovative Partnerships in Nursing Education.\u201d Abstract published in the <em>Proceedings of the<\/em>18<sup>th<\/sup><em>Annual NYU Langone Nursing Research and Evidence- Based Practice Conference, <\/em>Spring 2014.<\/li>\n<\/ul>\n<p><strong>Professor James Gillespie<\/strong> Mathematics<\/p>\n<ul>\n<li><em>AC-Gorenstein rings and their stable module categories<\/em>, to appear in Journal of the Australian Mathematical Society, Cambridge University Press.<\/li>\n<li><em>Duality pairs and stable module categories<\/em>, to appear in Journal of Pure and Applied Algebra, Elsevier Publishing.<\/li>\n<li>with Sergio Estrada,<em> The projective stable category of a coherent scheme<\/em>, Proceedings of the Royal Society of Edinburgh Section A:\u00a0Mathematics, 2018, pp.1-29 pages.\u00a0<a href=\"https:\/\/doi.org\/10.1017\/S0308210517000385\">https:\/\/doi.org\/10.1017\/S0308210517000385<\/a><\/li>\n<li><em>Gorenstein AC-projective complexes<\/em>, Journal of Homotopy and Relatated Structures, 2018, pp.1-23.<a href=\"https:\/\/doi.org\/10.1007\/s40062-018-0203-9\">https:\/\/doi.org\/10.1007\/s40062-018-0203-9<\/a><\/li>\n<li><em>On Ding injective, Ding projective, and Ding flat modules and complexes<\/em>, Rocky Mountain J. Math. vol. 47, no. 8, 2017,\u00a0pp.<a href=\"tel:2641-2673\">2641-2673<\/a>.<\/li>\n<li>with Sergio Estrada and Sinem Odabasi,<em> Pure exact structures and the pure derived category of a scheme<\/em>, Mathematical Proceedings of\u00a0the Cambridge Philosophical\u00a0Society vol. 163, no. 2, 2017,\u00a0pp.251-264.<\/li>\n<li><em>The flat stable module category of a coherent ring<\/em>, J. Pure Appl. Algebra vol. 221, no. 8, 2017, pp.<a href=\"tel:2025-2031\">2025-2031<\/a>.<\/li>\n<li><em>Models for homotopy categories of injectives and Gorenstein injectives<\/em>, Comm. Algebra vol. 45, no. 6, 2017, pp.<a href=\"tel:2520-2545\">2520-2545<\/a>.<\/li>\n<li><em>Hereditary abelian model categories<\/em>, Bulletin of the London Mathematical Society vol. 48, no. 6, 2016, pp.895-922.<\/li>\n<\/ul>\n<p><strong>Professor Eric Karlin <\/strong>\u00a0Plant Ecology<\/p>\n<ul>\n<li>Karlin, E. F. 2014. Subgenome analysis of two Southern Hemisphere allotriploid species in <em>Sphagnum <\/em>(Sphagnaceae). <a href=\"http:\/\/www.maneyonline.com\/doi\/abs\/10.1179\/1743282014Y.0000000098\"><em>Journal of Bryology<\/em> 36: 165\u2013179<\/a>.<\/li>\n<li>Karlin, E. F., E. M. Temsch, E. Bizuru, J. Marino*, S. B. Boles, N. Devos, A. J. Shaw. 2014. Invisible in plain sight: recurrent double allopolyploidy in the African\u00a0<em>Sphagnum<\/em>\u00a0\u00d7<em>planifolium<\/em>(Sphagnaceae).\u00a0<a href=\"http:\/\/www.bioone.org\/doi\/abs\/10.1639\/0007-2745-117.2.187\"><em>The Bryologist <\/em>117: 187\u2013201<\/a>.<\/li>\n<li>Sten\u00f8ien, H. K., K. Hassel, R. Segreto, R. Gabriel, <strong>E. F.<\/strong> <strong>Karlin<\/strong>, A. J. Shaw and K. I. Flatberg. 2014. High morphological diversity in remote island populations of the peat moss <em>Sphagnum palustre<\/em>: glacial refugium, adaptive radiation or just plasticity? <em><a href=\"http:\/\/www.bioone.org\/doi\/abs\/10.1639\/0007-2745-117.2.095\">The Bryologist 117: 95\u2013109<\/a><\/em>.<\/li>\n<li>Karlin, E. F., W. R. Buck, R. D. Seppelt, S. B. Boles, and A. J. Shaw. 2013. The double allopolyploid S<em>phagnum \u00d7falcatulum <\/em>(Sphagnaceae) in Tierra del Fuego, a Holantarctic perspective. <em><a href=\"http:\/\/www.maneyonline.com\/doi\/abs\/10.1179\/1743282013Y.0000000066\">Journal of Bryology 35: 157\u2013172<\/a><\/em>.<\/li>\n<li><a href=\"http:\/\/phobos.ramapo.edu\/%7Eekarlin\/publicat\/index.html\">Complete list of publications<\/a><\/li>\n<\/ul>\n<p>*Ramapo student<\/p>\n<p><strong>Professor Donovan McFeron\u00a0<\/strong>Mathematics<\/p>\n<ul>\n<li><strong>Donovan McFeron<\/strong> and Gabor Szekelyhidi \u201cOn the Positive Mass Theorem for manifolds with corners.\u201d Communications in Mathematical Physics. 313(2012), 425-443<\/li>\n<li><strong>Donovan McFeron<\/strong>, \u201cThe Mabuchi metric and the Kahler-Ricci flow.\u201d Proceedings of the American Mathematical Society (in press).<\/li>\n<\/ul>\n<p><strong>Professor Carrie Miller <\/strong>Chemistry &amp; Environmental Science<\/p>\n<ul>\n<li>Brooks, S., <strong>Miller, C<\/strong>., Riscassi, A., Lowe, K., Dickson, J., Schwartz, G. (2021) Increasing Temperature and Flow Management Alter Mercury Dynamics in East Fork Poplar Creek. Hydrological Processes. Available online. DOI 10.1002\/hyp.14344.<\/li>\n<li>Abdelmageed, Y, <strong>Miller, C<\/strong>, Sanders, C , Egbo, T , Johs, A , Robertson, BK. \u00a0(2021) Assessing microbial communities related to mercury transformations in contaminated streambank soil. Water Air Soil Pollut. 232: 31.<\/li>\n<li>Christensen, G., Gionfriddo, C., King, A., Moberly, J., <strong>Miller, C.<\/strong>, Somenahally, A., Callister, S., Brewer, H., Podar, M., Brown, S., Palumbo, A., Brandt, C., Wymore, A., Brooks, S., Hwang, C., Fields, M., Wall, J., Gilmour, C., Elias, D.\u00a0 (2019) Determining the Reliability of Measuring Mercury Cycling Gene Abundance with Correlations with Mercury and Methylmercury Concentrations. Environ. Sci. Technol.53:8649-8663.<\/li>\n<li>Demer, J., Blum. J., Brooks, S., Donovan, P., Riscassi, A., <strong>Miller<\/strong>, C., Zheng, W., Gu, B. (2018) Hg isotopes reveal in-stream processing and legacy inputs in East Fork Poplar Creek, Oak Ridge, Tennessee, USA. Enviro. Sci.: Process Impacts. 20:686-707.<\/li>\n<li>Christensen, G., Somenahally, A., Moberly, J., <strong>Miller<\/strong>, C., \u00a0King, A., \u00a0Gilmour, C., Brown, S., Podar, M., Brandt, C., Brooks, S., \u00a0Palumbo, A., \u00a0Wall, J., \u00a0Elias, D.\u00a0 (2017) Carbon Amendments Alter Microbial Community Structure and Net Mercury Methylation Potential in Sediments. Applied and Environmental Microbiology. DOI 10.1128\/AEM.01049-17.<\/li>\n<li>Riscassi, A., <strong>Miller, C<\/strong>., Brooks, B. (2016) Seasonal and flow-driven dynamics of particulate and dissolved mercury and methylmercury in a stream impacted by an industrial mercury source. Environ. Tox. and Chem. 35:1386-1400.<\/li>\n<li><strong>Miller, C<\/strong>., Watson, D., Lester, B., Howe, J., Philips, D., Liang, L., Pierce, E. (2015). Formation of soluble mercury oxide coatings: transformation of elemental mercury in soil. Environ. Sci. Technol. 49:12105-12111.<\/li>\n<\/ul>\n<p><strong>Professor Emma Rainforth\u00a0 <\/strong>Environmental Science<\/p>\n<ul>\n<li>Lucas, S.G., S. Voigt, A. Lerner, and <strong>E. C. Rainforth<\/strong>. 2013. \u2018Sphaerapus, a poorly known invertebrate trace fossil from nonmarine Permian and Jurassic strata of North America\u2019. Ichnos, in press.<\/li>\n<\/ul>\n<p><strong>Professor Edward Saiff <\/strong>\u00a0Biology<\/p>\n<ul>\n<li><strong>Saiff, Edward<\/strong>\u00a0 (2011). The Middle Ear Region of the Cariamiformes (Aves). Annals of the Carnegie Museum of Natural History 80(1): 29-33[CA student Daniel Fic was my illustrator]<\/li>\n<li><strong>Saiff, Edward<\/strong>\u00a0 (2006). The Middle Ear of Falconiiformes.. Annals of the Carnegie Museum of Natural History 75(2): 69-96 [student Thomas Nevins was my illustrator]<\/li>\n<\/ul>\n<p><strong>Professor Ash Stuart<\/strong>\u00a0Biochemistry &amp; Bioinformatics<\/p>\n<ul>\n<li>Vincent P. Buonaccorsi, Michael D. Boyle, Deborah Grove, Craig Praul, Eric Sakk, <strong>Ash Stuart<\/strong>, Tammy Tobin, Jay Hosler, Susan L. Carney, Michael J. Engle, Barry E. Overton, Jeffrey D. Newman, Marie Pizzorno, Jennifer R. Powell, and Nancy Trun, &#8220;GCAT-SEEKquence: Genome Consortium for Active Teaching of Undergraduates through Increased Faculty Access to Next-Generation Sequencing Data&#8221; <em>CBE-Life Science Education<\/em>, Vol. 10, 342-345, 2011.<\/li>\n<\/ul>\n<p><strong>Professor\u00a0<\/strong><b>Osei Tweneboah<\/b> Data Science<\/p>\n<ul>\n<li>M.C. Mariani, O.K. Tweneboah and M.P. Beccar-Varela, Data Science in Theory and Practice: Techniques for Big Data Analytics and Complex Data Sets, John Wiley &amp; Sons, September 2021.<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Publications &nbsp; Professor Steve Anderson\u00a0\u00a0Chemistry D. Mazza, T. Simons, A. Toth and S.\u00a0Anderson\u00a0(2012)\u00a0Reducing Unsaturated Organic Compounds via Transfer Hydrogenation using\u00a0Wilkinson&#8217;s Catalyst and Isopropanal,\u00a0JUCR,, 11, 59. Professor Paramjeet Bagga\u00a0 Bioinformatics, Genomics, Molecular Biology Frees, S., *Menendez, C., *Crum, M., and Bagga, P. (2014). QGRS-Conserve: a computational method for discovering evolutionarily conserved G-quadruplex motifs. Human Genomics. 8:8. [&hellip;]<\/p>\n","protected":false},"author":240,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"open","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-52","page","type-page","status-publish","hentry"],"yoast_head":"<!-- This site is optimized with the Yoast SEO Premium plugin v21.5 (Yoast SEO v27.1.1) - https:\/\/yoast.com\/product\/yoast-seo-premium-wordpress\/ -->\n<title>Student &amp; Faculty Publications - School of Theoretical and Applied Science (TAS) || Ramapo College of New Jersey<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/www.ramapo.edu\/tas\/publications-research\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Student &amp; Faculty Publications\" \/>\n<meta property=\"og:description\" content=\"Publications &nbsp; Professor Steve Anderson\u00a0\u00a0Chemistry D. Mazza, T. Simons, A. Toth and S.\u00a0Anderson\u00a0(2012)\u00a0Reducing Unsaturated Organic Compounds via Transfer Hydrogenation using\u00a0Wilkinson&#8217;s Catalyst and Isopropanal,\u00a0JUCR,, 11, 59. Professor Paramjeet Bagga\u00a0 Bioinformatics, Genomics, Molecular Biology Frees, S., *Menendez, C., *Crum, M., and Bagga, P. (2014). QGRS-Conserve: a computational method for discovering evolutionarily conserved G-quadruplex motifs. Human Genomics. 8:8. 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Mazza, T. Simons, A. Toth and S.\u00a0Anderson\u00a0(2012)\u00a0Reducing Unsaturated Organic Compounds via Transfer Hydrogenation using\u00a0Wilkinson&#8217;s Catalyst and Isopropanal,\u00a0JUCR,, 11, 59. Professor Paramjeet Bagga\u00a0 Bioinformatics, Genomics, Molecular Biology Frees, S., *Menendez, C., *Crum, M., and Bagga, P. (2014). QGRS-Conserve: a computational method for discovering evolutionarily conserved G-quadruplex motifs. Human Genomics. 8:8. 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